Pseudoknotted RNA ALignment
Consensus folding of unaligned RNA sequences
A New Approach to Multiple RNA Structure Alignment
Automatic identification of RNA structural motifs
Automatic update of 16s rRNA Phylogenetic Tree and Multiple Sequence Alignment in Metagenomics (updated: Dec 1 2009)
Given phylogenetic tree and multiple sequence alignment, show the Fitch score matrix.
microRNA Target Prediction using TargetScan (updated: Sep 13 2009)
Predicting Folding Pathways between RNA Conformational Structures Guided by RNA Stacks
Predicting stable local optimal structures for RNAs (e.g. riboswitches)
Predicting consensus stable local optimal structures for aligned RNA sequences (e.g. riboswitches)
Expression profile of ribosomal protein pseudogenes in 16 human tissues
Discovering Non-coding RNA Elements in Fly's 3'UTRs by Structural Clustering
Predicting consensus structures in RNA alignments by incorporating RNAalifold with phylogenetic information
Annotating ncRNA secondary structures with high-throughput sequencing based structure probing information
Efficient alignment of RNA secondary structures using sparse dynamic programming
Simultaneous folding of alternative RNA structures with mutual constraints: an application to next-generation sequencing based RNA structure probing
A program for RNA 3D structure alignment
A web server for RNA 3D structure alignment
A program for annotation of RNA using comparative method
Ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts
Visualization of RNA Structural Motif Variations and Discovery of Subfamilies
A Non-redundant RNA Structural Dataset for Benchmarking and Functional Analysis
A comprehensive method to analyze and identify structurally similar RNA motif families
RaPID-Query for fast identity by descent search and genealogical analysis
A stack-based RNA 3D structural alignment tool for circular matching
Fast and accurate local ancestry inference with Recomb-Mix
